In other words, spiking deconvolution tries to convert an input seismic trace into the earths reflectivity series. Timevarying wavelet estimation and its applications in deconvolution and seismic inversion. Complete deconvolution of cellular mixtures based on. The spiking deconvolution of a field seismic trace requires that the seismic wavelet on the trace be minimum phase. Calcium imaging is a powerful method to record the activity of neural populations, but inferring spike times from calcium signals is a challenging problem. The effect of spike and gap deconvolution on 2d land. In particular, predictive deconvolution is an integral part of seismic data processing that is aimed at compressing the seismic wavelet, thereby increasing temporal resolution. The deconvolution is an imageprocessing technique that restores the effective specimen representation for a 3d microscopy images.
Tvwd uses several windows and spiking deconvolution operators, which vary over time yilmaz 2001. Highresolution synthetic aperture ultrasound imaging with. We compared multiple approaches using multiple datasets with ground truth electrophysiology and found that simple nonnegative deconvolution nnd outperformed all other algorithms on outofsample test data. Simple example of wiener deconvolution in python github.
Deconvolution software free download deconvolution top 4 download offers free software downloads for windows, mac, ios and android computers and mobile devices. In the limit, it can be used to spike the seismic wavelet and obtain an estimate for reflectivity. Pdf euler deconvolution software for ms windows gordon. I dont however have a record of any reference for this code, im afraid. Deconvolution is sometimes called systems identification. Harris1,2 1 ucl institute of neurology, london wc1n 3bg, united kingdom. October 21, 2014 1 introduction deconvolution refers to the problem of estimating the unknown input to an lti system when. Predictive deconvolution for multiple and ghost removal.
Fast nonnegative deconvolution for spike train inference from population calcium imaging joshua t. Journal of petroleum exploration and production technology. In this paper we are performing spiking and gap deconvolution on land 2d data. Us20060256658a1 source signature deconvolution method. Another wellknown deconvolution method is predictive deconvolution, which tries to estimate and remove the multiple reflections from the data. Silvia, in handbook of digital signal processing, 1987.
How can subsurface structures be emphasised with an even higher degree of sharpness. Predictive deconvolution in seismic data processing in. Wiener spiking deconvolution and minimumphase wavelets. It is usually used to restore a signal from a known convolution with a known response. Robustness of spike deconvolution for calcium imaging of. Efficient deconvolution of groundpenetrating radar data. Waveshaping deconvolution is designed to convert one wavelet into another. On a dynamite trace, the component wavelets due to the effects of. Predictive deconvolution for multiple and ghost removal within reflexw the main goal of the predictive deconvolution is the supression of multiples.
Download deconvolution an intuitive image deconvolution and deblur application that can apply multiple different algorithms in order to improve the quality of your pictures. Click to view article as pdf gc what is deconvolution. Klauder wavelet removal before vibroseis deconvolution. Wiener spiking deconvolution and minimum a tutorial by jim leinbach san antonio, texas w hile working on the problem of enemy missile fire predic tion at mit during world war ii, norbert wiener developed a. Machado, tanya sippy, baktash babadi, rafael yuste, liam paninski april 26, 2010 abstract fluorescent calcium indicators are becoming increasingly popular as a means for observing the spiking activity. We present a fast online active set method to solve this sparse nonnegative deconvolution problem. Add pregressive nonblined deconvolution add blind kernel estimation implemented mehtod. To use this feature, pass the input image i and the initial guess at the psf, psfi, as cell arrays.
However, due to noise present in the data, the algorithm that designs the inverse filter develops some errors and thus the output diverges from the desired spike. Thus, frequency dependent interpretation can help to. Timevarying wavelet estimation and its applications in. Pdf efficient deconvolution of groundpenetrating radar data. The desired output is a time advanced parameter lag version of the input signal. The subject of deconvolution is rich in theory and computational algorithms.
Robustness of spike deconvolution for neuronal calcium. Deblur image using blind deconvolution matlab deconvblind. You can compare the results with the minimumphase deconvolution also called spiking deconvolution by setting in deconv method spiking in this case, deconv returns only fmin, wmin and x. Spiking deconvolution attempts to produce a spike or impulse at each reflection point in the field data. Yes, doing some dimensional analysis trying to derive your formulae from wiener filter i found that might be the case.
Comparison between optical and seismic deconvolution, removal of known and unknown sources of. Predictive deconvolution can also be used to increase resolution by altering wavelet shape and amplitude spectrum. Fast nonnegative deconvolution for spike train inference. Fluorescent calcium indicators are a popular means for observing the spiking activity of large neuronal populations, but extracting the activity of each neuron from raw fluorescence calcium imaging data is a nontrivial problem. Landini the code is based on a nih image macro kindly provided by a.
The deconvolution procedure here was adopted from 1 but di erent minimizing criteria and a. December 2019, volume 9, issue 4, pp 25832590 cite as. Its amplitude spectrum shown in frame b indicates that the wavelet has most of its energy confined to a 10 to 50hz range. Robustness of spike deconvolution for calcium imaging of neural spiking marius pachitariu1,2, carsen stringer3, and kenneth d. Deconvolution is a process that undoes the effects of convolution. The stepbystep demo of the full reflection seismic data processing workflow using a complete real seismic data set places itself as a very useful feature of the book.
View the article pdf and any associated supplements and figures for a period of 48 hours. Various software packages for deconvolution are available, both commercial ones and opensource ones. Wiener spiking deconvolution and minimum a tutorial by jim leinbach san antonio, texas w hile working on the problem of enemy missile fire predic tion at. Processing of seismic reflection data using matlab.
One could imagine implementing the filter 16 as a cascaded filter. Junseob shin and lianjie huang highresolution synthetic aperture ultrasound imaging with minimum variance beamforming and spiking deconvolution. Lowfrequency components of seismic data tend to characterize thicker lithostratigraphic units, while highfrequency components tend to characterize thinner isochronousstratigraphic units. The quality of output data is better than input data, and there is homogeneity in the distribution of frequencies. Predictive deconvolution in seismic data processing in atala prospect of rivers state, nigeria egbai, j. Stanford libraries official online search tool for books, media, journals, databases, government documents and more. Predictive deconvolution, on the other hand, does not attempt to output a spike. To supress multiples choose a lag coresponding to the twowaytraveltime of the multiple. The plugin assumes images generated by color subtraction i.
The more expensive mcmc method gives a significant improvement in the spike deconvolution according to the spike correlation metric. This short book is for students, professors and professionals interested in signal processing of seismic data using matlab. Spiking deconvolution is a special case where the gap is set to one sample and the resulting phase spectrum is zero. When you do, the deconvblind function returns the output image j and the restored pointspread function, psfr, as cell arrays, which can then be passed as the input arrays into. Calcium imaging is a powerful method to record the activity of neural populations in many species, but inferring spike times from calcium signals is a challenging problem. Pdf processing of seismic reflection data using matlab. The spiking deconvolution filter is modified by the semblance sw. Multichannel weiner deconvolution of vertical seismic profiles. Complete gene expression deconvolution remains a challenging problem. View enhanced pdf access article on wiley online library html view download pdf for offline viewing.
For example, if the original signal is, and the response is then their linear convolution is if we only know g and y and want to restore f, a deconvolution can be used. Spiking deconvolution with a 6 ms filter length obtained from the autocorrelation. Here, the authors provide a solution based on the recognition that expression levels of. These points are small or zero amplitudes that can exit for some values of the. They are computationally extensive requiring highend processors and huge memory capacities. Optimal timedelay spiking deconvolution and its application in the physical model measurement zhengsheng yao, gary f. We compared multiple approaches using multiple datasets with ground truth electrophysiology, and found that simple nonnegative deconvolution nnd outperformed all other algorithms. The semblance function which is a measure of the deconvolved signal energy as. Gallant abstract spike deconvolution based on wiener filter theory usually has the desired output as a zerolag spike, which works well for wavelets of minimum phase. Deconvolution software free download deconvolution top.
1067 429 475 1067 478 338 1504 516 908 1066 1099 1274 1401 1282 1329 1418 1336 966 451 903 743 638 191 856 807 1373 731 146 736 1187 122 1030 64 215 674 281 1098 1049 1339 387 718 1080 405 415